rs948646 chr18:76406212 G>A
- Sequence
ctgacttcttcaccaccaggtggc[G/A]cctgtgctggatttctactctgaa
- ASB in cell types
- HeLa (cervical adenocarcinoma) adrenal gland GM19239 (male B-cells lymphoblastoid cell line) EOL-1 (Acute myeloid leukemia)
- ASB for transcription factors
- CTCF_HUMAN RAD21_HUMAN STAG1_HUMAN SMC1A_HUMAN
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-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 2.20 | 0.41 | 1.41 | -1.80 | Weak Concordant | |||
| RAD21_HUMAN | 1.63 | 0.24 | 1.26 | n/a | n/a | |||
| STAG1_HUMAN | 1.98 | -1.74 | 1.80 | n/a | n/a | |||
| SMC1A_HUMAN | 1.90 | 0.25 | 1.00 | n/a | n/a |
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Motif analysis
