rs951623 chr1:212225720 T>C

Sequence
accaaggtgttaatgacgtaactc[T/C]ctcctcacaggaaaagctgctctg
ASB in cell types
GM12878 (female B-cells lymphoblastoid cell line)
ASB for transcription factors
ATF2_HUMAN ATF7_HUMAN IKZF1_HUMAN IKZF2_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (T) ASB
color scale alt
-log10 FDR of Alt (C) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
ATF2_HUMAN -0.46 3.35 1.001.2·10-5 1.00 n/a No Hit
ATF7_HUMAN -0.44 3.18 0.956.3·10-5 1.25 n/a No Hit
IKZF1_HUMAN -1.30 2.20 1.001.3·10-3 1.25 n/a n/a
IKZF2_HUMAN 0.04 2.10 1.000.02 1.00 n/a n/a
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Motif analysis

No data available

Genetic associations

GRASP cystatin c in serum,  fasting insulin,  homa-b,  homa-ir,  ldl cholesterol,  total cholesterol
GTEx eQTL Adipose_Subcutaneous,  Adipose_Visceral_Omentum,  Brain_Caudate_basal_ganglia,  Brain_Hippocampus,  Brain_Putamen_basal_ganglia,  Breast_Mammary_Tissue,  Esophagus_Mucosa,  Lung,  Ovary,  Pancreas,  Skin_Not_Sun_Exposed_Suprapubic,  Skin_Sun_Exposed_Lower_leg,  Stomach,  Testis,  Thyroid,  Whole_Blood

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