rs9527 chr10:102863821 C>T
- Sequence
tcattatcaggccagctgcagcct[C/T]ttgccttgacctgcattcctagaa
- ASB in cell types
- CD34+ hematopoietic stem cells-derived proerythroblasts
- ASB for transcription factors
- TAL1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| TAL1_HUMAN | 2.89 | -5.22 | 2.00 | -1.11 | Weak Concordant |
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Motif analysis
Genetic associations
GRASP arsenical skin lesion risk, as3mt gene expression in lymphocytes, asthma, c10orf26 gene expression in lymphocytes, c10orf32 gene expression in lymphocytes, college completion, cystatin c in serum, diastolic blood pressure (dbp), fasting blood glucose, pcgf6 gene expression in lymphocytes, postoperative nausea and vomiting, systolic blood pressure (sbp), triglycerides change with statins, urinary concentrations of arsenic metabolites (percentage dimethylarsinic acid), urinary concentrations of arsenic metabolites (percentage inorganic arsenic), urinary concentrations of arsenic metabolites (percentage monomethylarsonic acid), usmg5 gene expression in lymphocytes, years of education
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Adrenal_Gland, Artery_Aorta, Artery_Coronary, Artery_Tibial, Brain_Amygdala, Brain_Anterior_cingulate_cortex_BA24, Brain_Caudate_basal_ganglia, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Brain_Cortex, Brain_Frontal_Cortex_BA9, Brain_Hippocampus, Brain_Hypothalamus, Brain_Nucleus_accumbens_basal_ganglia, Brain_Putamen_basal_ganglia, Brain_Spinal_cord_cervical_c-1, Brain_Substantia_nigra, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Cells_EBV-transformed_lymphocytes, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Kidney_Cortex, Liver, Lung, Minor_Salivary_Gland, Muscle_Skeletal, Nerve_Tibial, Ovary, Pancreas, Pituitary, Prostate, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Small_Intestine_Terminal_Ileum, Spleen, Stomach, Testis, Thyroid, Uterus, Vagina, Whole_Blood