rs953413 chr6:11012626 G>A
- Sequence
aaaacgctaaaggtcacaaagccc[G/A]tattatttctatattgcaaaaatt
- ASB in cell types
- HepG2 (hepatoblastoma)
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Cell type | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | |
|---|---|---|---|---|---|---|
| HepG2 (hepatoblastoma) | 0.93 | 0.11 | 2.00 |
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Motif analysis
No data available
Genetic associations
GRASP bipolar disorder, docosahexaenoic acid, docosapentanoic acid, eicosapentanoic acid, hdl cholesterol, hdl cholesterol change with statins, plasma docosahexaenoic acid levels, plasma docosapentaenoic acid levels, plasma eicosapentaenoic acid levels, schizophrenia, sporadic creutzfeldt-jakob disease, total cholesterol change with statins, triglycerides change with statins
GTEx eQTL Brain_Amygdala, Brain_Caudate_basal_ganglia, Brain_Cerebellum, Brain_Cortex, Brain_Frontal_Cortex_BA9, Brain_Hippocampus, Brain_Hypothalamus, Brain_Nucleus_accumbens_basal_ganglia, Brain_Putamen_basal_ganglia, Brain_Spinal_cord_cervical_c-1, Brain_Substantia_nigra, Colon_Sigmoid, Esophagus_Muscularis, Heart_Left_Ventricle, Liver, Muscle_Skeletal, Prostate, Testis, Whole_Blood