rs953431 chr5:17249311 A>G
- Sequence
caaatttggtcaaaacaagaagcc[A/G]tctgctcctctcttggggatgcct
- ASB in cell types
- A549 (lung carcinoma) HCASMC (Human coronary artery smooth muscle cells) MDM(monocyte derived macrophages)
- ASB for transcription factors
- TCF21_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| TCF21_HUMAN | 3.45 | n/a | 2.00 | -4.63 | Concordant |
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Motif analysis
Genetic associations
GRASP alzheimers disease (left hippocampal grey matter density), ldl cholesterol, lp-pla2 mass, maternal transmission distortion, rheumatoid arthritis, serum creatinine
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Esophagus_Gastroesophageal_Junction, Esophagus_Muscularis, Heart_Left_Ventricle, Muscle_Skeletal, Whole_Blood