rs954494 chr3:36707861 G>A
- Sequence
tgtgaagtgacagctaagatcacc[G/A]cctgctggccagcaggatggaggt
- ASB in cell types
- IMR-5 (Neuroblastoma) SK-N-SH (neuroblastoma) GM02630 (Fanconi anemi) esophagus squamous epithelium
- ASB for transcription factors
- CTCF_HUMAN RAD21_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 0.40 | 2.21 | 1.36 | 2.48 | Concordant | |||
| RAD21_HUMAN | -1.51 | 3.22 | 1.30 | n/a | n/a |
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Motif analysis
