rs954555 chr5:168592082 A>G
- Sequence
agcaaggctgatctcgctcatgat[A/G]cagaagtctgtctcttttaccttg
- ASB in cell types
- breast tumor 22RV1 (prostate carcinoma) primary breast cancer
- ASB for transcription factors
- FOXA1_HUMAN ANDR_HUMAN PRGR_HUMAN
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-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| FOXA1_HUMAN | 1.40 | -0.01 | 1.51 | n/a | No Hit | |||
| ANDR_HUMAN | 2.20 | 0.10 | 1.43 | n/a | No Hit | |||
| PRGR_HUMAN | 2.48 | n/a | 2.00 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GRASP adiponectin levels, fasting insulin, homa-ir, infant head circumference, total cholesterol, triglycerides
GTEx eQTL Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Brain_Cortex, Cells_Cultured_fibroblasts, Esophagus_Mucosa, Heart_Left_Ventricle, Liver, Lung, Muscle_Skeletal, Small_Intestine_Terminal_Ileum, Spleen, Testis, Thyroid