rs960117 chr12:46220036 C>T
- Sequence
cccccttatcagatgcatcacaga[C/T]gactcataaactagcaatagctgc
- ASB in cell types
- TTC-1240 (Rhabdoid tumor of the kidney) CD34+ hematopoietic stem cells-derived proerythroblasts EOL-1 (Acute myeloid leukemia) GM12878 (female B-cells lymphoblastoid cell line)
- ASB for transcription factors
- GATA1_HUMAN SMRC1_HUMAN SSXT_HUMAN SMCA4_HUMAN
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-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| GATA1_HUMAN | n/a | 3.00 | 2.00 | n/a | No Hit | |||
| SMRC1_HUMAN | -0.26 | 2.08 | 2.00 | n/a | n/a | |||
| SSXT_HUMAN | -2.99 | 3.05 | 1.00 | n/a | n/a | |||
| SMCA4_HUMAN | -0.28 | 2.16 | 1.67 | n/a | n/a | |||
| IKZF2_HUMAN | -1.01 | 1.81 | 1.00 | n/a | n/a |
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