rs960511 chr17:75565337 T>C
- Sequence
ggagggagggccctctcctaatga[T/C]gctggcctgaaagggcctgaggcc
- ASB in cell types
- MDA-MB-453 (breast adenocarcinoma) RPMI8226 (Plasma cell myeloma)
- ASB for transcription factors
- FOXA1_HUMAN ANDR_HUMAN IKZF1_HUMAN
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-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| FOXA1_HUMAN | n/a | 3.02 | 1.50 | n/a | No Hit | |||
| ANDR_HUMAN | 0.37 | 3.13 | 1.75 | n/a | No Hit | |||
| IKZF1_HUMAN | 0.10 | 2.08 | 1.75 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GRASP advanced age-related macular degeneration, advanced age-related macular degeneration (choroidal neovascularization) vs. no amd
GTEx eQTL Artery_Tibial, Cells_EBV-transformed_lymphocytes, Esophagus_Mucosa, Esophagus_Muscularis, Lung, Muscle_Skeletal, Nerve_Tibial, Pancreas, Skin_Not_Sun_Exposed_Suprapubic, Thyroid, Whole_Blood