rs960512 chr17:75565238 C>G

Sequence
accggcagagccctgagtcagcct[C/G]gtaaattgtgtgacaggcaagacc
ASB in cell types
MDA-MB-453 (breast adenocarcinoma) RPMI8226 (Plasma cell myeloma)
ASB for transcription factors
FOXA1_HUMAN IKZF1_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (C) ASB
color scale alt
-log10 FDR of Alt (G) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
FOXA1_HUMAN n/a 2.76 1.009.0·10-6 1.50 n/a No Hit
IKZF1_HUMAN -0.75 2.73 1.001.5·10-3 1.75 n/a n/a
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Motif analysis

No data available

Genetic associations

GRASP advanced age-related macular degeneration,  advanced age-related macular degeneration (choroidal neovascularization) vs. no amd,  childhood acute lymphoblastic leukemia,  irritible bowel syndrome,  ldl cholesterol
GTEx eQTL Artery_Tibial,  Cells_EBV-transformed_lymphocytes,  Esophagus_Mucosa,  Lung,  Muscle_Skeletal,  Pancreas,  Skin_Not_Sun_Exposed_Suprapubic,  Thyroid,  Whole_Blood

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