rs961904 chr6:140961462 T>C
- Sequence
tgatttagaaactagaggccgttg[T/C]tgaccttgccaaaaataagacctt
- ASB in cell types
- VCaP (prostate carcinoma)
- ASB for transcription factors
- FOXA1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| FOXA1_HUMAN | 1.09 | -0.26 | 1.62 | -4.01 | Concordant |
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Motif analysis
Genetic associations
GRASP body mass index (bmi), height, ldl cholesterol change with statins, severe diabetic retinopathy, total cholesterol, total cholesterol change with statins
GTEx eQTL Adipose_Visceral_Omentum, Artery_Aorta, Artery_Tibial, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Colon_Transverse, Esophagus_Muscularis, Lung, Minor_Salivary_Gland, Nerve_Tibial, Pancreas, Spleen, Testis, Thyroid, Whole_Blood