rs962440 chr20:2984205 A>G
- Sequence
gtaatgtcttccatctctaaaaac[A/G]aaaccaaaaaaaacccatctgtcc
- ASB in cell types
- GM12878 (female B-cells lymphoblastoid cell line)
- ASB for transcription factors
- ATF7_HUMAN TBX21_HUMAN PKNX1_HUMAN IKZF1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| ATF7_HUMAN | -3.17 | 3.03 | 1.00 | n/a | No Hit | |||
| TBX21_HUMAN | -2.48 | 2.73 | 1.00 | n/a | No Hit | |||
| PKNX1_HUMAN | -1.63 | 2.03 | 1.00 | n/a | No Hit | |||
| IKZF1_HUMAN | -0.98 | 1.38 | 1.25 | n/a | n/a |
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