rs963615 chr5:58460109 C>T
- Sequence
gcgagtgagagcgctcggcgaagt[C/T]ttatatacggggaggcgggaaggg
- ASB in cell types
- LNCaP (prostate carcinoma) A549 (lung carcinoma) CD14+ monocytes HepG2 (hepatoblastoma)
- ASB for transcription factors
- MNT_HUMAN TYY1_HUMAN E2F1_HUMAN TBP_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| MNT_HUMAN | n/a | 3.07 | 1.00 | n/a | No Hit | |||
| TYY1_HUMAN | 2.31 | -4.50 | 1.50 | n/a | No Hit | |||
| E2F1_HUMAN | 0.55 | 1.79 | 1.00 | n/a | No Hit | |||
| TBP_HUMAN | -0.33 | 0.63 | 2.88 | -1.19 | Weak Discordant | |||
| STAT1_HUMAN | 2.31 | -4.97 | 3.00 | n/a | No Hit |
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Motif analysis
