rs964702 chr2:33202713 T>C

Sequence
gggaactgagccaggctgggtcag[T/C]agagggcagaggtgaattgtggct
ASB for transcription factors
CTCF_HUMAN
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View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (T) ASB
color scale alt
-log10 FDR of Alt (C) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
CTCF_HUMAN 1.50 0.02 1.6·10-41.00 1.12 0.23 Weak Discordant
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Motif analysis

CTCF_HUMAN Weak Discordant
CTCF_HUMAN pic

Genetic associations

GRASP advanced age-related macular degeneration (choroidal neovascularization) vs. no amd,  height,  ldl cholesterol,  total cholesterol,  triglycerides change with statins,  waist hip ratio
GTEx eQTL Artery_Tibial,  Cells_Cultured_fibroblasts

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