rs9656461 chr7:135800044 T>C
- Sequence
ttataaaaggacagcaatagcgcc[T/C]cctttacagagttgctgtgagggt
- ASB in cell types
- 2588 (Lymphoblastoid Cell Lines) GM19238 (female B-cells lymphoblastoid cell lines) SK-N-SH (neuroblastoma) GM19099 (female B-cells Lymphoblastoid Cell Lines)
- ASB for transcription factors
- CTCF_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | -0.38 | 2.19 | 1.33 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GRASP advanced age-related macular degeneration (choroidal neovascularization) vs. no amd, obesity with early age of onset (age >2), prop taste detection threshold, urinary albumin-to-creatinine ratio