rs965661 chr8:102585358 C>T
- Sequence
tacgtcaacctttcagctttggtg[C/T]caccgctagggagcgtcggtttgc
- ASB in cell types
- Kelly (neuroblastoma) VCaP (prostate carcinoma) foreskin keratinocyte TTC-1240 (Rhabdoid tumor of the kidney)
- ASB for transcription factors
- CTCF_HUMAN CTCFL_HUMAN SMCA4_HUMAN KDM6A_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 1.74 | 0.32 | 1.32 | 0.38 | Weak Discordant | |||
| CTCFL_HUMAN | 1.75 | 0.21 | 1.00 | -3.21 | Concordant | |||
| SMCA4_HUMAN | 1.28 | 0.51 | 1.12 | n/a | n/a | |||
| KDM6A_HUMAN | 2.98 | n/a | 3.00 | n/a | n/a | |||
| STAT1_HUMAN | 2.24 | n/a | 4.00 | 0.69 | Weak Discordant |
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Motif analysis
