rs965791 chr12:120293273 A>G

Sequence
ccccctgctcatcactcccaataa[A/G]ccagcttcctatttcgcaaaggtg
ASB in cell types
HEK293T (embryonic kidney) 22RV1 (prostate carcinoma) HEK293 (embryonic kidney) HepG2 (hepatoblastoma)
ASB for transcription factors
ANDR_HUMAN TBP_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (A) ASB
color scale alt
-log10 FDR of Alt (G) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
ANDR_HUMAN n/a 4.10 1.001.2·10-5 2.00 n/a No Hit
TBP_HUMAN 2.02 -2.13 5.5·10-41.00 1.67 n/a No Hit
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Motif analysis

No data available

Genetic associations

GRASP 2 hour glucose,  fasting blood glucose,  waist hip ratio
GTEx eQTL Adipose_Subcutaneous,  Artery_Aorta,  Artery_Tibial,  Brain_Cerebellar_Hemisphere,  Cells_Cultured_fibroblasts,  Colon_Transverse,  Esophagus_Mucosa,  Esophagus_Muscularis,  Heart_Left_Ventricle,  Muscle_Skeletal,  Nerve_Tibial,  Ovary,  Skin_Not_Sun_Exposed_Suprapubic,  Skin_Sun_Exposed_Lower_leg,  Spleen,  Thyroid

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