rs966003 chr2:54657733 C>T
- Sequence
tggacagggctaatttagagtaga[C/T]gatagactggttatgcaggtagcc
- ASB in cell types
- gastroesophageal sphincter thoracic aorta
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Cell type | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | |
|---|---|---|---|---|---|---|
| gastroesophageal sphincter | -0.14 | 2.26 | 1.00 | |||
| thoracic aorta | 1.61 | -1.40 | 1.00 |
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Motif analysis
No data available
Genetic associations
GRASP biploar disorder (bipolar affective disorder with comorbid migraine), chronic kidney disease, ldl cholesterol, serum creatinine, total cholesterol
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Aorta, Artery_Tibial, Brain_Amygdala, Brain_Anterior_cingulate_cortex_BA24, Brain_Caudate_basal_ganglia, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Brain_Cortex, Brain_Frontal_Cortex_BA9, Brain_Hippocampus, Brain_Hypothalamus, Brain_Spinal_cord_cervical_c-1, Colon_Sigmoid, Esophagus_Mucosa, Esophagus_Muscularis, Lung, Muscle_Skeletal, Nerve_Tibial, Pancreas, Pituitary, Prostate, Skin_Sun_Exposed_Lower_leg, Spleen, Testis, Thyroid, Whole_Blood