rs9667193 chr11:71813815 A>G
- Sequence
aagccagggcgattgcgcctccct[A/G]actatgggtgaagaaaaatcaggt
- ASB in cell types
- adrenal gland tibial nerve esophagus squamous epithelium VCaP (prostate carcinoma)
- ASB for transcription factors
- CTCF_HUMAN RAD21_HUMAN AP2A_HUMAN ZFX_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 2.50 | 0.47 | 1.46 | n/a | No Hit | |||
| RAD21_HUMAN | 2.84 | 0.26 | 1.50 | n/a | n/a | |||
| AP2A_HUMAN | 2.76 | -2.50 | 1.00 | n/a | No Hit | |||
| ZFX_HUMAN | 2.23 | -0.29 | 1.38 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Adrenal_Gland, Artery_Aorta, Artery_Coronary, Artery_Tibial, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Brain_Nucleus_accumbens_basal_ganglia, Brain_Putamen_basal_ganglia, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Cells_EBV-transformed_lymphocytes, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Liver, Lung, Muscle_Skeletal, Nerve_Tibial, Pancreas, Prostate, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Small_Intestine_Terminal_Ileum, Spleen, Stomach, Testis, Thyroid, Vagina, Whole_Blood