rs9668186 chr12:52884597 C>A

Sequence
gttccacattttccatacaaagcc[C/A]gtgcataggtcacaccgatttgat
ASB in cell types
HepG2 (hepatoblastoma)
ASB for transcription factors
TBX3_HUMAN SP130_HUMAN ELF3_HUMAN CEBPA_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (C) ASB
color scale alt
-log10 FDR of Alt (A) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
TBX3_HUMAN -4.37 4.25 1.002.8·10-8 1.00 n/a No Hit
SP130_HUMAN n/a 3.79 1.005.1·10-6 1.00 n/a n/a
ELF3_HUMAN -3.63 3.52 1.008.0·10-5 1.00 n/a No Hit
CEBPA_HUMAN n/a 2.79 1.001.1·10-4 1.50 n/a No Hit
P66A_HUMAN -0.95 3.67 1.002.2·10-3 1.50 n/a n/a
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Motif analysis

No data available

Genetic associations

GRASP advanced age-related macular degeneration (choroidal neovascularization) vs. no amd,  advanced age-related macular degeneration (geographic atrophy),  birth weight,  fasting blood glucose,  mitral annular calcium
GTEx eQTL Artery_Aorta,  Nerve_Tibial,  Pancreas,  Thyroid,  Whole_Blood

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