rs9668504 chr12:4308066 C>G
- Sequence
ggtgtaggttgcctctgccctgca[C/G]ggaagggaacacctccctccagca
- ASB in cell types
- HEK293 (embryonic kidney) MS-1 (Small cell lung carcinoma) GBM39 (Human brain tumor) GM19238 (female B-cells lymphoblastoid cell lines)
- ASB for transcription factors
- ZIC2_HUMAN GLIS2_HUMAN STAG1_HUMAN SMC3_HUMAN
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-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| ZIC2_HUMAN | n/a | 4.23 | 2.00 | 4.65 | Concordant | |||
| GLIS2_HUMAN | n/a | 3.18 | 2.00 | n/a | No Hit | |||
| STAG1_HUMAN | 0.52 | 1.50 | 1.00 | n/a | n/a | |||
| SMC3_HUMAN | 1.67 | -0.92 | 1.00 | n/a | n/a | |||
| ZN189_HUMAN | -4.70 | 2.60 | 2.00 | 3.07 | Concordant |
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Motif analysis
