rs9669006 chr12:8396805 G>T

Sequence
ccgcgggccgctcgtggtcctctg[G/T]cgccctctgctggccgctcacgcg
ASB in cell types
HCT-116 (colon carcinoma) glioblastoma cells MCF7L-P(immortalized breast epithelial cell line) Kelly (neuroblastoma)
ASB for transcription factors
CTCF_HUMAN RAD21_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (G) ASB
color scale alt
-log10 FDR of Alt (T) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
CTCF_HUMAN 0.65 1.39 1.003.5·10-27 1.44 -4.67 Discordant
RAD21_HUMAN 0.72 2.30 1.002.8·10-3 1.85 n/a n/a
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Motif analysis

CTCF_HUMAN Discordant
CTCF_HUMAN pic

Genetic associations

GTEx eQTL Brain_Anterior_cingulate_cortex_BA24,  Brain_Cortex,  Brain_Frontal_Cortex_BA9,  Lung,  Pituitary

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