rs9682156 chr3:101513051 A>T
- Sequence
ctgcgcctcccgtttcccccgggt[A/T]ggagacaatatgttcagcccttct
- ASB in cell types
- 22RV1 (prostate carcinoma) hTERT-HME1(Telomerase immortalized cell line)
- ASB for transcription factors
- ANDR_HUMAN BRCA2_HUMAN GABP1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| ANDR_HUMAN | 2.95 | -1.87 | 2.00 | -1.06 | Weak Concordant | |||
| BRCA2_HUMAN | -1.02 | 1.87 | 1.00 | n/a | n/a | |||
| GABP1_HUMAN | -1.54 | 2.12 | 1.00 | n/a | n/a |
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Motif analysis
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Aorta, Artery_Tibial, Brain_Cerebellum, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Lung, Nerve_Tibial, Skin_Sun_Exposed_Lower_leg, Thyroid, Whole_Blood