rs968389 chr3:8769477 A>G
- Sequence
gcctcccaggctgcgcgcgcggac[A/G]gcgtctggatgcggcgctgtgcgc
- ASB in cell types
- T47D (invasive ductal carcinoma) CUTLL1 (T-cell lymphoblastic lymphoma 1) SLK (Clear cell renal cell carcinoma. Derived from metastatic site: Skin.Clear cell renal cell carcinoma (NCIt: C4033) Derived from metastatic site: Skin) MDA-MB-231-1833 (breast cancer cells, bone-tropic metastatic line)
- ASB for transcription factors
- JUN_HUMAN CDN1B_HUMAN HIF1A_HUMAN
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-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| JUN_HUMAN | n/a | 1.77 | 3.71 | n/a | No Hit | |||
| CDN1B_HUMAN | -0.07 | 1.33 | 4.00 | n/a | n/a | |||
| HIF1A_HUMAN | -1.55 | 2.61 | 2.00 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Brain_Amygdala, Brain_Anterior_cingulate_cortex_BA24, Brain_Caudate_basal_ganglia, Brain_Cortex, Brain_Frontal_Cortex_BA9, Brain_Hippocampus, Brain_Hypothalamus, Brain_Nucleus_accumbens_basal_ganglia, Brain_Putamen_basal_ganglia