rs968532 chr1:212284975 G>T
- Sequence
ggcgctctattttgctctctgaac[G/T]caccctctcaagtttcccagtctt
- ASB in cell types
- monocytes from periferal blood HepG2 (hepatoblastoma) GM12878 (female B-cells lymphoblastoid cell line)
- ASB for transcription factors
- HDAC2_HUMAN SRBP2_HUMAN TADBP_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| HDAC2_HUMAN | -0.47 | 1.96 | 1.00 | n/a | n/a | |||
| SRBP2_HUMAN | 1.29 | -0.77 | 3.00 | 3.27 | Discordant | |||
| TADBP_HUMAN | -1.56 | 1.56 | 1.00 | n/a | n/a |
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Motif analysis
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Brain_Amygdala, Brain_Anterior_cingulate_cortex_BA24, Brain_Caudate_basal_ganglia, Brain_Hippocampus, Brain_Hypothalamus, Brain_Nucleus_accumbens_basal_ganglia, Brain_Putamen_basal_ganglia, Brain_Substantia_nigra, Breast_Mammary_Tissue, Esophagus_Mucosa, Kidney_Cortex, Lung, Minor_Salivary_Gland, Muscle_Skeletal, Pancreas, Pituitary, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Stomach, Testis, Thyroid, Whole_Blood