rs968567 chr11:61828092 C>T
- Sequence
gaggaggtgtcgaggccctgagct[C/T]ccggggagtttttactggaggcaa
- ASB in cell types
- HEK293 (embryonic kidney) monocytes from periferal blood HUVEC-C (HUVEC, umbilical vein endothelial cells) HEK293T (embryonic kidney)
- ASB for transcription factors
- SP2_HUMAN SRBP2_HUMAN LMBL2_HUMAN RBM25_HUMAN
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-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| SP2_HUMAN | -1.30 | 1.50 | 1.00 | n/a | No Hit | |||
| SRBP2_HUMAN | 2.27 | n/a | 3.00 | n/a | No Hit | |||
| LMBL2_HUMAN | n/a | 2.36 | 2.00 | n/a | n/a | |||
| RBM25_HUMAN | -1.32 | 2.03 | 2.00 | n/a | n/a | |||
| ESR1_HUMAN | 1.79 | -4.53 | 2.00 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
EMBL-EBI blood metabolite levels, fatty acid desaturase activity (serum), glycerophospholipid levels, rheumatoid arthritis, serum metabolite ratios in chronic kidney disease, vitiligo
GRASP alkaline phosphatase (alp) in plasma, asthma, attention-deficit/hyperactivity disorder (adhd), bipolar disorder, comorbid depressive syndrome and alcohol dependence, fads1 gene expression in peripheral blood leucocytes, fads2 gene expression in liver, fads2 gene expression in peripheral blood leucocytes, fasting insulin, hdl cholesterol, homa-b, irritible bowel syndrome, ldl cholesterol, ldl cholesterol change with statins, maternal transmission distortion, plasma alpha-linolenic acid levels, plasma docosapentaenoic acid levels, plasma eicosapentaenoic acid levels, plasma oleic acid, rheumatoid arthritis, total cholesterol, total cholesterol change with statins, triglycerides
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Aorta, Artery_Coronary, Artery_Tibial, Brain_Anterior_cingulate_cortex_BA24, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Brain_Cortex, Brain_Frontal_Cortex_BA9, Brain_Hippocampus, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Cells_EBV-transformed_lymphocytes, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Lung, Muscle_Skeletal, Nerve_Tibial, Ovary, Pancreas, Pituitary, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Small_Intestine_Terminal_Ileum, Spleen, Stomach, Testis, Thyroid, Whole_Blood