rs971224 chr1:185602801 G>A

Sequence
ggatgcaagatgataaaagcctaa[G/A]ttaaggcacttagcagtgatgaca
ASB in cell types
iPSC-derived cardiomyocytes
ASB for transcription factors
TBX5_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (G) ASB
color scale alt
-log10 FDR of Alt (A) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
TBX5_HUMAN 1.81 -3.49 0.031.00 1.50 -0.06 Weak Concordant
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Motif analysis

TBX5_HUMAN Weak Concordant
TBX5_HUMAN pic

Genetic associations

GRASP arthritis including non-rheumatoid,  hdl cholesterol,  irritible bowel syndrome,  schizophrenia,  spine bone mineral density (bmd),  triglycerides change with statins,  years of education
GTEx eQTL Artery_Aorta,  Artery_Tibial,  Heart_Atrial_Appendage,  Skin_Sun_Exposed_Lower_leg,  Testis

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