rs971362 chr18:11980619 G>T
- Sequence
ctgagctcctgcgaggccgagaac[G/T]acgcctagcgcccagcggcctccg
- ASB in cell types
- HCT-116 (colon carcinoma) HEK293 (embryonic kidney) GM19238 (female B-cells lymphoblastoid cell lines) GM18486 (Lymphoblastoid Cell Lines)
- ASB for transcription factors
- CTCF_HUMAN ZFX_HUMAN TYY1_HUMAN STAT1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 2.04 | -0.03 | 1.37 | -2.08 | Concordant | |||
| ZFX_HUMAN | 4.32 | 0.07 | 1.00 | n/a | No Hit | |||
| TYY1_HUMAN | 0.02 | 1.44 | 1.00 | n/a | No Hit | |||
| STAT1_HUMAN | 2.26 | n/a | 2.00 | n/a | No Hit |
Items per page:
1 – 4 of 4
Motif analysis
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Artery_Tibial, Breast_Mammary_Tissue, Pituitary, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Spleen, Testis, Thyroid