rs971922 chr5:154445626 C>G
- Sequence
cctctttaggtcccctcatatgcc[C/G]ctcctccaagtctgtccctcagcg
- ASB in cell types
- GM12878 (female B-cells lymphoblastoid cell line) breast tumor
- ASB for transcription factors
- ZSC29_HUMAN ESR1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| ZSC29_HUMAN | 2.75 | -2.55 | 1.00 | n/a | No Hit | |||
| ESR1_HUMAN | n/a | 2.69 | 2.00 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Thyroid