rs973126 chr4:107720144 T>C
- Sequence
ccagttctgcgcgttattgctcag[T/C]ttgactttcttgcacaggctcccg
- ASB in cell types
- HUVEC-C (HUVEC, umbilical vein endothelial cells) BEAS-2B (bronchial epithelium) MDM(monocyte derived macrophages)
- ASB for transcription factors
- GCR_HUMAN HMGB1_HUMAN TF65_HUMAN
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-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| GCR_HUMAN | 0.63 | 1.21 | 1.00 | n/a | No Hit | |||
| HMGB1_HUMAN | -3.17 | 3.03 | 1.00 | n/a | n/a | |||
| TF65_HUMAN | n/a | 3.00 | 3.00 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Adrenal_Gland, Brain_Cerebellum, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Left_Ventricle, Liver, Lung, Minor_Salivary_Gland, Muscle_Skeletal, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Small_Intestine_Terminal_Ileum, Testis, Thyroid, Whole_Blood