rs974561 chr20:38962541 G>C
- Sequence
agctgggcgctgccgcctctgtgc[G/C]gggggagctctggctcaggctccc
- ASB in cell types
- GM12892 (female B-cells lymphoblastoid cell line) primary B-CLL cells 22RV1 (prostate carcinoma) MDA-MB-231 (breast adenocarcinoma)
- ASB for transcription factors
- CTCF_HUMAN STAG1_HUMAN BRD2_HUMAN
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-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 0.15 | 0.96 | 1.27 | n/a | No Hit | |||
| STAG1_HUMAN | -0.69 | 1.28 | 1.12 | n/a | n/a | |||
| BRD2_HUMAN | 0.18 | 1.32 | 3.00 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Artery_Aorta, Artery_Tibial, Brain_Cortex, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Colon_Transverse, Esophagus_Mucosa, Esophagus_Muscularis, Liver, Lung, Nerve_Tibial, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Spleen, Testis, Thyroid, Whole_Blood