rs974572 chr3:97822174 C>T

Sequence
aggcaacacctaggccgttccctt[C/T]agacagccccgggccagcggcccc
ASB in cell types
MDA-MB-231 (breast adenocarcinoma) GM18486 (Lymphoblastoid Cell Lines) SUM159PT (Triple negative breast cancer)
ASB for transcription factors
BRD2_HUMAN
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View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (C) ASB
color scale alt
-log10 FDR of Alt (T) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
BRD2_HUMAN 0.34 1.32 1.003.0·10-3 1.08 n/a n/a
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Motif analysis

No data available

Genetic associations

GTEx eQTL Adipose_Subcutaneous,  Adipose_Visceral_Omentum,  Brain_Cortex,  Brain_Frontal_Cortex_BA9,  Cells_Cultured_fibroblasts,  Esophagus_Mucosa,  Skin_Not_Sun_Exposed_Suprapubic,  Skin_Sun_Exposed_Lower_leg,  Stomach,  Whole_Blood

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