rs974654 chr17:69870525 A>C

Sequence
acagtaatttaagcctgggaatgc[A/C]atttattcaaactcctcatttcct
ASB in cell types
HUVEC-C (HUVEC, umbilical vein endothelial cells)
ASB for transcription factors
TF65_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (A) ASB
color scale alt
-log10 FDR of Alt (C) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
TF65_HUMAN 1.74 n/a 0.041.00 3.00 2.73 Discordant
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Motif analysis

TF65_HUMAN Discordant
TF65_HUMAN pic

Genetic associations

GRASP bipolar disorder,  college completion,  hdl cholesterol change with statins,  height
GTEx eQTL Adipose_Visceral_Omentum,  Brain_Frontal_Cortex_BA9,  Brain_Hypothalamus,  Cells_Cultured_fibroblasts,  Colon_Sigmoid,  Esophagus_Gastroesophageal_Junction,  Esophagus_Muscularis,  Muscle_Skeletal,  Nerve_Tibial,  Skin_Not_Sun_Exposed_Suprapubic,  Testis,  Thyroid

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