rs9747628 chr17:82883137 T>C
- Sequence
cgtgcatgtccccggcgtccttca[T/C]gttgacgcgggccccgccccacgg
- ASB in cell types
- 22RV1 (prostate carcinoma) LNCaP (prostate carcinoma) LNCaP C4-2 (prostate carcinoma)
- ASB for transcription factors
- FOXA1_HUMAN ANDR_HUMAN BRD4_HUMAN
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-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| FOXA1_HUMAN | 1.59 | -0.77 | 1.50 | n/a | No Hit | |||
| ANDR_HUMAN | 2.66 | -0.87 | 1.75 | n/a | No Hit | |||
| BRD4_HUMAN | -0.29 | 1.94 | 1.00 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Adrenal_Gland, Artery_Aorta, Artery_Tibial, Brain_Anterior_cingulate_cortex_BA24, Brain_Caudate_basal_ganglia, Brain_Cortex, Brain_Frontal_Cortex_BA9, Brain_Hippocampus, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Liver, Lung, Muscle_Skeletal, Nerve_Tibial, Pancreas, Pituitary, Prostate, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Small_Intestine_Terminal_Ileum, Stomach, Testis, Thyroid, Whole_Blood