rs9747676 chr17:82963169 A>G
- Sequence
gcagccttgggggatggagcaccc[A/G]gaactgcctggaggagaaaagcgt
- ASB in cell types
- GM18486 (Lymphoblastoid Cell Lines) GM19238 (female B-cells lymphoblastoid cell lines) SEM (childhood B acute lymphoblastic leukemia) GM12890 (Lymphoblastoid Cell Lines)
- ASB for transcription factors
- STAG1_HUMAN ERG_HUMAN ZN444_HUMAN
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-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| STAG1_HUMAN | 0.68 | 1.46 | 1.17 | n/a | n/a | |||
| ERG_HUMAN | -3.10 | 2.23 | 1.33 | 4.31 | Concordant | |||
| ZN444_HUMAN | 1.95 | -1.68 | 1.00 | n/a | No Hit |
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Motif analysis
Genetic associations
GRASP birth weight, diastolic blood pressure (dbp), hdl cholesterol change with statins, systolic blood pressure (sbp), total cholesterol
GTEx eQTL Adipose_Subcutaneous, Artery_Aorta, Artery_Tibial, Cells_Cultured_fibroblasts, Esophagus_Mucosa, Esophagus_Muscularis, Muscle_Skeletal, Pancreas, Pituitary, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Spleen, Testis, Whole_Blood