rs9749442 chr19:57633151 C>G
- Sequence
agacaggggcatttccgtgtgggt[C/G]tacccccgccccccccagggcggg
- ASB in cell types
- HEK293 (embryonic kidney) HepG2 (hepatoblastoma) MDA-MB-231p27CK-DD (breast cancer cells, phosphimimetic p27 cell line) adult erythroblasts
- ASB for transcription factors
- ZFHX2_HUMAN RBM25_HUMAN CDN1B_HUMAN RBBP5_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| ZFHX2_HUMAN | n/a | 2.89 | 2.00 | n/a | n/a | |||
| RBM25_HUMAN | n/a | 2.78 | 3.00 | n/a | n/a | |||
| CDN1B_HUMAN | 1.89 | -1.14 | 2.00 | n/a | n/a | |||
| RBBP5_HUMAN | 2.21 | n/a | 2.50 | n/a | n/a | |||
| KLF8_HUMAN | n/a | 1.88 | 2.00 | -2.70 | Discordant |
Items per page:
1 – 5 of 6
Motif analysis
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Adrenal_Gland, Artery_Aorta, Artery_Tibial, Brain_Amygdala, Brain_Cerebellar_Hemisphere, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Cells_EBV-transformed_lymphocytes, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Left_Ventricle, Liver, Lung, Muscle_Skeletal, Nerve_Tibial, Pancreas, Prostate, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Small_Intestine_Terminal_Ileum, Spleen, Stomach, Testis, Thyroid, Whole_Blood