rs975577 chr17:36630182 G>A
- Sequence
atccctcctgtcctgccagtttgc[G/A]gaagtggcatcttgcattatttcc
- ASB in cell types
- CTV-1 (Adult T acute lymphoblastic leukemia) HL-60 (acute myeloid leukemia)
- ASB for transcription factors
- SPI1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| SPI1_HUMAN | 2.14 | 1.87 | 1.42 | -2.35 | Discordant |
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Motif analysis
Genetic associations
GRASP cystatin c in serum, diastolic blood pressure (dbp), fasting insulin, homa-b, homa-ir, hypertension (early onset hypertension), late onset alzheimers disease, neuroticism, plasma brain natriuretic peptide (bnp), systolic blood pressure (sbp), triglycerides
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Aorta, Artery_Tibial, Brain_Spinal_cord_cervical_c-1, Cells_Cultured_fibroblasts, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Lung, Muscle_Skeletal, Nerve_Tibial, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Spleen, Stomach, Testis, Thyroid, Whole_Blood