rs9768501 chr7:155297446 A>G
- Sequence
cgccgcctcccggccaggcgcggg[A/G]caccaggcgaggggagccaggagc
- ASB in cell types
- GBM39 (Human brain tumor) upper lobe of left lung PANC1 (pancreatic ductal adenocarcinoma) gastrocnemius medialis
- ASB for transcription factors
- CTCF_HUMAN STAG1_HUMAN SMC3_HUMAN RAD21_HUMAN
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-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 2.92 | -0.14 | 1.38 | n/a | No Hit | |||
| STAG1_HUMAN | 2.47 | -0.87 | 1.13 | n/a | n/a | |||
| SMC3_HUMAN | 2.28 | 0.17 | 2.00 | n/a | n/a | |||
| RAD21_HUMAN | 1.88 | -1.23 | 1.50 | n/a | n/a | |||
| E2F1_HUMAN | 2.26 | -0.24 | 1.50 | -3.14 | Concordant |
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Motif analysis
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Cells_Cultured_fibroblasts, Liver, Lung, Muscle_Skeletal, Nerve_Tibial, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Whole_Blood