rs976944 chr5:128974079 G>A
- Sequence
ccacagtgtccctgaaaaaatgga[G/A]acattccaaagccggtttcctgag
- ASB in cell types
- LNCaP (prostate carcinoma) VCaP (prostate carcinoma) 22RV1 (prostate carcinoma)
- ASB for transcription factors
- ANDR_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| ANDR_HUMAN | 1.12 | 0.87 | 1.60 | 2.34 | Discordant |
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Motif analysis
Genetic associations
GTEx eQTL Brain_Amygdala, Brain_Caudate_basal_ganglia, Brain_Frontal_Cortex_BA9, Brain_Nucleus_accumbens_basal_ganglia, Brain_Putamen_basal_ganglia, Heart_Atrial_Appendage, Heart_Left_Ventricle, Nerve_Tibial, Testis, Whole_Blood