rs9784870 chr6:5261126 A>G
- Sequence
ctggcggacggatatcggaggccc[A/G]ggcattcgagggacgtgcagttgc
- ASB in cell types
- esophagus squamous epithelium adrenal gland GM19240 (B cells Lymphoblastoid Cell Lines) Peyer's patch
- ASB for transcription factors
- CTCF_HUMAN ZFX_HUMAN TYY1_HUMAN RBM25_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | -0.13 | 2.81 | 2.12 | n/a | No Hit | |||
| ZFX_HUMAN | -0.49 | 1.35 | 1.07 | -0.11 | Weak Discordant | |||
| TYY1_HUMAN | -2.11 | 2.90 | 2.00 | n/a | No Hit | |||
| RBM25_HUMAN | -1.74 | 2.17 | 2.00 | n/a | n/a | |||
| SMCA5_HUMAN | -2.61 | 2.85 | 1.00 | n/a | n/a |
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Motif analysis
Genetic associations
GTEx eQTL Artery_Aorta, Artery_Coronary, Artery_Tibial, Brain_Cerebellum, Brain_Frontal_Cortex_BA9, Brain_Hippocampus, Cells_Cultured_fibroblasts, Colon_Sigmoid, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Lung, Muscle_Skeletal, Thyroid, Whole_Blood