rs978909 chr2:226906673 T>G
- Sequence
taaatgctgcttagcataaaagac[T/G]tgatgtggaacaaagcctgcagac
- ASB in cell types
- MS-1 (Small cell lung carcinoma)
- ASB for transcription factors
- CTCF_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 0.61 | 2.08 | 1.00 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GRASP body mass index (bmi), diastolic blood pressure (dbp), hdl cholesterol, personality disorders (pd) - cluster b, systolic blood pressure (sbp), triglycerides
GTEx eQTL Adipose_Visceral_Omentum, Artery_Aorta, Artery_Tibial, Brain_Caudate_basal_ganglia, Brain_Cortex, Brain_Nucleus_accumbens_basal_ganglia, Brain_Putamen_basal_ganglia, Breast_Mammary_Tissue, Esophagus_Muscularis, Lung, Skin_Not_Sun_Exposed_Suprapubic, Testis, Thyroid