rs9790033 chr3:100580 T>C
- Sequence
gtcccaataatgtggtccctgacc[T/C]caccctcacactgacaggtgcctt
- ASB in cell types
- iPS-derived chondrocytes
- ASB for transcription factors
- RARA_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| RARA_HUMAN | 1.68 | 0.03 | 1.00 | -0.96 | Weak Concordant |
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Motif analysis
Genetic associations
GTEx eQTL Adipose_Visceral_Omentum, Brain_Cerebellum, Colon_Sigmoid, Esophagus_Muscularis, Muscle_Skeletal, Testis, Thyroid