rs979746 chr17:48258750 A>C
- Sequence
cattctacagtcactgaacataaa[A/C]aaccataaagttacagctgctttt
- ASB in cell types
- LNCaP (prostate carcinoma) T47D (invasive ductal carcinoma) VCaP (prostate carcinoma) 22RV1 (prostate carcinoma)
- ASB for transcription factors
- ANDR_HUMAN FOXA1_HUMAN PRGR_HUMAN HXB13_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| ANDR_HUMAN | 0.14 | 1.51 | 1.52 | 3.03 | Concordant | |||
| FOXA1_HUMAN | -0.42 | 2.02 | 1.62 | 4.03 | Concordant | |||
| PRGR_HUMAN | -0.43 | 1.49 | 1.50 | n/a | No Hit | |||
| HXB13_HUMAN | 0.05 | 1.65 | 1.20 | -2.07 | Discordant | |||
| GCR_HUMAN | -4.26 | 1.88 | 2.00 | n/a | No Hit |
Items per page:
1 – 5 of 5
Motif analysis
