rs980280 chr6:151677588 G>A

Sequence
tttgtaaatcttttgagtgattac[G/A]cagcatttgttccctattgttcat
ASB in cell types
MCF7 (Invasive ductal breast carcinoma)
ASB for transcription factors
FOXA1_HUMAN BRD4_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (G) ASB
color scale alt
-log10 FDR of Alt (A) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
FOXA1_HUMAN -1.14 1.32 1.003.3·10-3 1.31 2.94 Concordant
BRD4_HUMAN -1.09 2.14 1.004.1·10-3 2.00 n/a n/a
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Motif analysis

FOXA1_HUMAN Concordant
FOXA1_HUMAN pic

Genetic associations

GRASP 2 hour glucose,  bipolar disorder,  breast cancer,  diastolic blood pressure (dbp),  fasting insulin,  homa-ir,  systolic blood pressure (sbp),  total cholesterol,  transmission distortion,  triglycerides,  triglycerides change with statins
GTEx eQTL Thyroid

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