rs9811533 chr3:39498420 A>G
- Sequence
gctggagtgcagtggcgcgacctc[A/G]gctcgctgcaatctccgcctcccg
- ASB in cell types
- GM19240 (B cells Lymphoblastoid Cell Lines)
- ASB for transcription factors
- CTCF_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 1.51 | 0.14 | 1.00 | -0.35 | Weak Concordant |
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Motif analysis
Genetic associations
GTEx eQTL Cells_EBV-transformed_lymphocytes, Muscle_Skeletal, Nerve_Tibial, Skin_Sun_Exposed_Lower_leg, Thyroid