rs9811555 chr3:46046453 A>T
- Sequence
ggaagtgactgccttcagcaaacc[A/T]tctggcagtgagagcagtcgtgag
- ASB in cell types
- CTV-1 (Adult T acute lymphoblastic leukemia) Jurkat (T-cells)
- ASB for transcription factors
- SPI1_HUMAN KDM6A_HUMAN SMCA4_HUMAN FLI1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| SPI1_HUMAN | 1.51 | 0.51 | 1.00 | n/a | No Hit | |||
| KDM6A_HUMAN | 2.71 | -2.40 | 1.00 | n/a | n/a | |||
| SMCA4_HUMAN | 1.22 | 0.14 | 1.00 | n/a | n/a | |||
| FLI1_HUMAN | 1.32 | -1.10 | 1.00 | n/a | No Hit | |||
| ETS1_HUMAN | 0.92 | -0.81 | 1.00 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Esophagus_Mucosa, Esophagus_Muscularis, Lung, Muscle_Skeletal, Nerve_Tibial, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Testis, Thyroid, Whole_Blood