rs9815226 chr3:98784266 A>G

Sequence
ctgggagagagatggaccagcaac[A/G]cgaagttcccctttgtgttctact
ASB in cell types
breast tumor 22RV1 (prostate carcinoma)
ASB for transcription factors
PRGR_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (A) ASB
color scale alt
-log10 FDR of Alt (G) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
PRGR_HUMAN 2.47 -4.70 0.021.00 2.00 -1.64 Weak Concordant
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Motif analysis

PRGR_HUMAN Weak Concordant
PRGR_HUMAN pic

Genetic associations

GRASP height,  parkinsons disease,  triglycerides change with statins
GTEx eQTL Adipose_Subcutaneous,  Adipose_Visceral_Omentum,  Adrenal_Gland,  Artery_Aorta,  Artery_Coronary,  Artery_Tibial,  Colon_Sigmoid,  Esophagus_Gastroesophageal_Junction,  Esophagus_Mucosa,  Esophagus_Muscularis,  Heart_Atrial_Appendage,  Heart_Left_Ventricle,  Lung,  Muscle_Skeletal,  Nerve_Tibial,  Pituitary,  Skin_Not_Sun_Exposed_Suprapubic,  Skin_Sun_Exposed_Lower_leg,  Thyroid,  Whole_Blood

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