rs9816164 chr3:72996500 T>C

Sequence
atagggcatcagtaccagtgccct[T/C]actgtacagatggggaaaatgagg
ASB in cell types
MOLT-4 (Adult T acute lymphoblastic leukemia) HEK293 (embryonic kidney) HEK293T (embryonic kidney) HepG2 (hepatoblastoma)
ASB for transcription factors
SPT5H_HUMAN SMAD3_HUMAN BRD4_HUMAN ZFX_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (T) ASB
color scale alt
-log10 FDR of Alt (C) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
SPT5H_HUMAN -1.14 2.30 1.001.6·10-7 1.00 n/a n/a
SMAD3_HUMAN -0.78 2.10 0.950.02 1.00 n/a No Hit
BRD4_HUMAN 0.32 1.42 1.000.02 1.86 n/a n/a
ZFX_HUMAN 0.59 1.51 1.000.03 1.91 n/a No Hit
JUN_HUMAN -0.15 1.41 1.000.03 3.00 n/a No Hit
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Motif analysis

No data available

Genetic associations

GRASP birth weight,  cystatin c in serum,  parkinsons disease,  serum creatinine
GTEx eQTL Adipose_Subcutaneous,  Artery_Tibial,  Brain_Spinal_cord_cervical_c-1,  Cells_Cultured_fibroblasts,  Esophagus_Gastroesophageal_Junction,  Esophagus_Muscularis,  Lung,  Muscle_Skeletal,  Nerve_Tibial,  Pancreas,  Skin_Not_Sun_Exposed_Suprapubic,  Skin_Sun_Exposed_Lower_leg,  Spleen,  Thyroid

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