rs982447 chr7:107333089 T>C
- Sequence
attaagatcaaaggaagtacagtg[T/C]aaaaaacttagcaaaaggtctatg
- ASB in cell types
- CTV-1 (Adult T acute lymphoblastic leukemia) MDM(monocyte derived macrophages)
- ASB for transcription factors
- SPI1_HUMAN SMCA4_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| SPI1_HUMAN | 1.32 | 0.16 | 1.29 | n/a | No Hit | |||
| SMCA4_HUMAN | 1.11 | 0.15 | 1.00 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GRASP alzheimers disease, arthritis including non-rheumatoid, irritible bowel syndrome, ldl cholesterol, paternal transmission distortion, refractive error, salmonella-induced pyroptosis, transmission distortion, triglycerides, waist hip ratio
GTEx eQTL Adipose_Subcutaneous, Brain_Cortex, Cells_Cultured_fibroblasts, Esophagus_Mucosa, Lung, Minor_Salivary_Gland, Nerve_Tibial, Pancreas, Prostate, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Spleen, Testis, Thyroid, Whole_Blood