rs9825276 chr3:194089832 T>C
- Sequence
aggggagggcaaggccaaacttgc[T/C]ggagtgcaacattgcatcaccgag
- ASB in cell types
- HepG2 (hepatoblastoma) HCASMC (Human coronary artery smooth muscle cells) Detroit 562 (Pharyngeal squamous cell carcinoma) MDM(monocyte derived macrophages)
- ASB for transcription factors
- TBX3_HUMAN JUN_HUMAN JUND_HUMAN RARA_HUMAN
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-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| TBX3_HUMAN | 2.39 | -2.28 | 1.00 | n/a | No Hit | |||
| JUN_HUMAN | -0.14 | 3.25 | 1.47 | n/a | No Hit | |||
| JUND_HUMAN | -3.48 | 2.30 | 1.33 | n/a | No Hit | |||
| RARA_HUMAN | 1.67 | -0.83 | 1.08 | 1.50 | Weak Discordant | |||
| FOXA3_HUMAN | 2.36 | -2.38 | 1.00 | n/a | No Hit |
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Motif analysis
